Oxford Nanopore Technologies

The sampling rate of the raw signal in the pod5 file can be found within the metadata and extracted using the pod5-inspect tool:

<a href="https://github.com/nanoporetech/pod5-file-format/blob/master/python/pod5/README.md#pod5-inspect" rel="nofollow noopener noreferrer" target="_blank">https://github.com/nanoporetech/pod5-file-format/blob/master/python/pod5/README.md#pod5-inspect</a>

Look for the 'sample_rate' field in the output of 'pod5 inspect debug &lt;path to pod5 file&gt;'. Example:

$ pod5 inspect debug pod5_pass/FAU41813_pass_e6a4b621_0.pod5 | grep sample_rate sample_rate: 5000

How do I check if my pod5 file was generated using the 4 kHz or 5 kHz sampling rate?

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